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Gene Expression Analysis

Gene Expression Analysis

The products in this section are used in gene expression analysis. Specific applications include generation of ds DNA from small RNAs for high through-put (next-gen) sequencing templates, labelled small RNA for microarray analyses, identification of 5'' and 3'' eukaryotic mRNA, identification of exact transcription start sites and creation of cDNA libaries that represent full-length selected transcripts from total RNA or enriched mRNA. The TargetAmp Kits produce microgram amounts of aRNA form mRNA in total RNA and can incorporate both aminoallyl and biotin labels if desired.

Product Highlights 

ExactSTART Platform of Transcriptome Discovery Tools
Epicentre Biotechnologies 

The ExactSTART (START Selective Tagging and Amplification of RNA Transcripts) Platform Kits combine the advantages of T4 RNA Ligase mediated RNA tagging with a select group of RNA modifying enzymes that have strict enzymatic specificity. When used in a defined order, these enzymes enable the researcher to selectively 'tag' the 5' and 3' ends of a specific class of RNA contained in a total RNA preparation. Examples include 5'-capped RNAs (eukaryotic mRNA's and eukaryotic viral RNAs), 5' –triphosphorylated RNA's (e.g., some noncoding RNA's), 5'-monophosphorylated RNAs (e.g., miRNA, large rRNAs), as well as other RNAs whose functions are not yet identified. By incorporating 5' and 3' tags with unique, functional sequences, the selected class of transcripts can be amplified for a specific downstream apllication such as next-gen sequencing, rapid amplification of cDNA ends (RACE), library cloning, RT-PCR, microarray target preparation, and other gene discovery and analysis methods. 

TargetAmp aRNA Amplification
Epicentre Biotechnologies 

DNA microarrays provide a powerful method to measure the abundance of thousands of different RNA molecules in a single experiment. The amount of RNA required for gene expression analysis, however, can be a limiting factor when the available biological sample is small, as in the case of needle biopsies or laser capture micro-dissected cells. RNA amplification technology has made transcription profiling of such small samples feasible. 

TargetAmp aRNA kits utilises a significantly improved 'Eberwine-type' aRNA amplification protocol, that generates microgram quantities of amplified antisense RNA from picogram amounts of total RNA. This represents at least 5,000,000-fold amplification of the polyadenylated component of the original total RNA, making microarray analysis of single cells possible. 

The aRNA produced can be labeled with biotin or fluorescent dyes, and performs well on multiple microarray. 

Further information on TargetAmp: